Genome Meta Information: Staphylococcus lugdunensis FDAARGOS_377 (GCA_002407165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002407165.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis FDAARGOS_377 | ||
| Strain or Isolate | FDAARGOS_377 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 1141.12 | ||
| Contigs |
|
||
| Total Sequence Length | 2,571,633 (bp) | ||
| GC Percentage | 33.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/407/165/GCA_002407165.1_ASM240716v1 | ||
| CDS | 2381 | ||
| Genes | 2546 | ||
| mRNA | 2546 | ||
| misc RNA | 84 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 97.61 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM240716v1 |
| GenBank Assembly Accession | GCA_002407165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002407165.1 [NCBI] |
| BioSample | SAMN07312421 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center |
| Submission Date | 2017-07-03T15:03:04.613 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28035 |
| Isolation Source | abscess |
| Geo Location | USA:DC |
