Taxon Table | Genome Table
Genome Meta Information:
Fusobacterium
polymorphum
12230 MIT 2016 (GCA_002417615.1)
| HOMD Genome-ID |
GCA_002417615.1
|
| HOMD Taxon-ID |
HMT-0202
|
| Species Name (in use by HOMD) |
Fusobacterium polymorphum
|
| Organism Name (as deposited) |
HMT-202 Fusobacterium polymorphum 12230 MIT 2016
|
| Strain or Isolate |
12230 MIT 2016
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;
s__Fusobacterium polymorphum |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
61.25
|
| Contigs |
Number of Contigs: 234
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,470,496 (bp) |
| GC Percentage |
26.79
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/417/615/GCA_002417615.1_ASM241761v1
|
| CDS |
2388
|
| Genes |
2471
|
| mRNA |
2471
|
| misc RNA |
25
|
| rRNA |
9
|
| tRNA |
48
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
92.38 %
|
| CheckM Completeness |
97.31 %
|
| CheckM Contamination |
3.92 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM241761v1
|
| GenBank Assembly Accession |
GCA_002417615.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_002417615.1
[NCBI]
|
| BioSample |
SAMN07710844
[NCBI]
|
| BioProject |
PRJNA412393
[NCBI]
|
| Submitter |
MIT
|
| Submission Date |
2017-09-27T14:43:02.713
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
NXMD01
|
| NCBI TaxID |
851
|
| Isolation Source |
trans-trachea
|
| Geo Location |
USA
|
