Genome Meta Information: Tannerella forsythia WW10960 (GCA_002529295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002529295.1 | ||
| HOMD Taxon-ID | HMT-0613 | ||
| Species Name (in use by HOMD) | Tannerella forsythia | ||
| Organism Name (as deposited) | HMT-613 Tannerella forsythia WW10960 | ||
| Strain or Isolate | WW10960 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella; s__Tannerella forsythia |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 19 | ||
| Contigs |
|
||
| Total Sequence Length | 3,312,685 (bp) | ||
| GC Percentage | 47.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/529/295/GCA_002529295.1_ASM252929v1 | ||
| CDS | 2776 | ||
| Genes | 2847 | ||
| mRNA | 2847 | ||
| misc RNA | 20 | ||
| rRNA | 5 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.59 % | ||
| CheckM Completeness | 98.03 % | ||
| CheckM Contamination | 3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM252929v1 |
| GenBank Assembly Accession | GCA_002529295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002529295.1 [NCBI] |
| BioSample | SAMN07602663 [NCBI] |
| BioProject | PRJNA401301 [NCBI] |
| Submitter | University of Leicester |
| Submission Date | 2017-09-04T08:59:05.097 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NSLK01 |
| NCBI TaxID | 28112 |
| Isolation Source | Subgingival plaque |
| Geo Location | United Kingdom: London |
