Genome Meta Information: Cutibacterium avidum CI855 (GCA_002578705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002578705.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum CI855 | ||
| Strain or Isolate | CI855 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 219 | ||
| Contigs |
|
||
| Total Sequence Length | 2,541,663 (bp) | ||
| GC Percentage | 63.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/705/GCA_002578705.1_ASM257870v1 | ||
| CDS | 2312 | ||
| Genes | 2389 | ||
| mRNA | 2389 | ||
| misc RNA | 23 | ||
| rRNA | 7 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.66 % | ||
| CheckM Completeness | 97.06 % | ||
| CheckM Contamination | 3.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM257870v1 |
| GenBank Assembly Accession | GCA_002578705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002578705.1 [NCBI] |
| BioSample | SAMN06644705 [NCBI] |
| BioProject | PRJNA380511 [NCBI] |
| Submitter | University of California, Los Angeles |
| Submission Date | 2017-03-26T15:45:05.603 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NBIR01 |
| NCBI TaxID | 33010 |
| Isolation Source | joint of pelvis |
| Geo Location | Switzerland:Zurich |
