Genome Meta Information: Cutibacterium avidum CI882 (GCA_002578825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002578825.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum CI882 | ||
| Strain or Isolate | CI882 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 327 | ||
| Contigs |
|
||
| Total Sequence Length | 2,497,070 (bp) | ||
| GC Percentage | 63.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/578/825/GCA_002578825.1_ASM257882v1 | ||
| CDS | 2257 | ||
| Genes | 2339 | ||
| mRNA | 2339 | ||
| misc RNA | 21 | ||
| rRNA | 8 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.72 % | ||
| CheckM Completeness | 94.31 % | ||
| CheckM Contamination | 2.58 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM257882v1 |
| GenBank Assembly Accession | GCA_002578825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002578825.1 [NCBI] |
| BioSample | SAMN06644707 [NCBI] |
| BioProject | PRJNA380511 [NCBI] |
| Submitter | University of California, Los Angeles |
| Submission Date | 2017-03-26T15:45:05.763 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NBIP01 |
| NCBI TaxID | 33010 |
| Isolation Source | joint of pelvis |
| Geo Location | Switzerland:Zurich |
