Genome Meta Information: Fusobacterium necrophorum P1_LM (GCA_002762025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002762025.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum P1_LM | ||
| Strain or Isolate | P1_LM | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | MiSeq | ||
| Genome Coverage | 55 | ||
| Contigs |
|
||
| Total Sequence Length | 2,094,200 (bp) | ||
| GC Percentage | 35.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/762/025/GCA_002762025.1_ASM276202v1 | ||
| CDS | 1976 | ||
| Genes | 2039 | ||
| mRNA | 2039 | ||
| misc RNA | 21 | ||
| rRNA | 3 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.61 % | ||
| CheckM Completeness | 98.23 % | ||
| CheckM Contamination | 0.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM276202v1 |
| GenBank Assembly Accession | GCA_002762025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002762025.1 [NCBI] |
| BioSample | SAMN07448030 [NCBI] |
| BioProject | PRJNA362951 [NCBI] |
| Submitter | Dana-Farber Cancer Institute |
| Submission Date | 2017-08-03T14:42:03.546 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NPNE01 |
| NCBI TaxID | 143387 |
| Isolation Source | Liver metastasis |
| Geo Location | Spain |
