Genome Meta Information: Corynebacterium mastitidis 16-1433 (GCA_002835695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002835695.1 | ||
| HOMD Taxon-ID | HMT-0328 | ||
| Species Name (in use by HOMD) | Corynebacterium mastitidis | ||
| Organism Name (as deposited) | HMT-328 Corynebacterium mastitidis 16-1433 | ||
| Strain or Isolate | 16-1433 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium mastitidis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 197.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,264,319 (bp) | ||
| GC Percentage | 69.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/835/695/GCA_002835695.1_ASM283569v1 | ||
| CDS | 2150 | ||
| Genes | 2219 | ||
| mRNA | 2219 | ||
| misc RNA | 12 | ||
| rRNA | 3 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.66 % | ||
| CheckM Completeness | 99.59 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM283569v1 |
| GenBank Assembly Accession | GCA_002835695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002835695.1 [NCBI] |
| BioSample | SAMN08138579 [NCBI] |
| BioProject | PRJNA421318 [NCBI] |
| Submitter | Bacterial Special Pathogens Branch (CDC) |
| Submission Date | 2017-12-06T11:32:04.207 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PJAF01 |
| NCBI TaxID | 161890 |
| Isolation Source | skin |
| Geo Location | USA: New York City |
