Genome Meta Information: Veillonella parvula UMB0371 (GCA_002847925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002847925.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula UMB0371 | ||
| Strain or Isolate | UMB0371 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_H |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 136.98 | ||
| Contigs |
|
||
| Total Sequence Length | 2,150,556 (bp) | ||
| GC Percentage | 38.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/925/GCA_002847925.1_ASM284792v1 | ||
| CDS | 1937 | ||
| Genes | 2018 | ||
| mRNA | 2018 | ||
| misc RNA | 25 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.14 % | ||
| CheckM Completeness | 98.41 % | ||
| CheckM Contamination | 1.57 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM284792v1 |
| GenBank Assembly Accession | GCA_002847925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002847925.1 [NCBI] |
| BioSample | SAMN08193736 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:06.289 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKHW01 |
| NCBI TaxID | 29466 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
