Genome Meta Information: Streptococcus salivarius UMB0051 (GCA_002860785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002860785.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius UMB0051 | ||
| Strain or Isolate | UMB0051 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius_E |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 274.6 | ||
| Contigs |
|
||
| Total Sequence Length | 2,377,669 (bp) | ||
| GC Percentage | 39.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/785/GCA_002860785.1_ASM286078v1 | ||
| CDS | 2140 | ||
| Genes | 2237 | ||
| mRNA | 2237 | ||
| misc RNA | 41 | ||
| rRNA | 5 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.1 % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 2.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM286078v1 |
| GenBank Assembly Accession | GCA_002860785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002860785.1 [NCBI] |
| BioSample | SAMN08193732 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:06.215 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKIA01 |
| NCBI TaxID | 1304 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
