Genome Meta Information: Streptococcus mitis UMB0079 (GCA_002860825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002860825.1 | ||
| HOMD Taxon-ID | HMT-677 | ||
| Species Name (in use by HOMD) | Streptococcus mitis | ||
| Organism Name (as deposited) | HMT-677 Streptococcus mitis UMB0079 | ||
| Strain or Isolate | UMB0079 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mitis_AT |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 364.1x | ||
| Contigs |
|
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| Total Sequence Length | 1,964,794 (bp) | ||
| GC Percentage | 40.0 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/825/GCA_002860825.1_ASM286082v1 | ||
| CDS | 1836 | ||
| Genes | 1965 | ||
| mRNA | 1965 | ||
| misc RNA | 63 | ||
| rRNA | 8 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.7 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.06 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Streptococcus__mitis__HMT_677
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM286082v1 |
| GenBank Assembly Accession | GCA_002860825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002860825.1 [NCBI] |
| BioSample | SAMN08193729 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:06.168 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PKID01 |
| NCBI TaxID | 28037 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
