Genome Meta Information: Streptococcus mitis UMB1341 (GCA_002860865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002860865.1 | ||
| HOMD Taxon-ID | HMT-677 | ||
| Species Name (in use by HOMD) | Streptococcus mitis | ||
| Organism Name (as deposited) | HMT-677 Streptococcus mitis UMB1341 | ||
| Strain or Isolate | UMB1341 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mitis_AT |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 344.3x | ||
| Contigs |
|
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| Total Sequence Length | 2,081,765 (bp) | ||
| GC Percentage | 39.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/860/865/GCA_002860865.1_ASM286086v1 | ||
| CDS | 1955 | ||
| Genes | 2065 | ||
| mRNA | 2065 | ||
| misc RNA | 52 | ||
| rRNA | 6 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.79 % | ||
| CheckM Completeness | 99.82 % | ||
| CheckM Contamination | 0.2 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Streptococcus__mitis__HMT_677
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM286086v1 |
| GenBank Assembly Accession | GCA_002860865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002860865.1 [NCBI] |
| BioSample | SAMN08193728 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:06.151 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKIE01 |
| NCBI TaxID | 28037 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
