Genome Meta Information: Streptococcus mitis UMB0079b (GCA_002871315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002871315.1 | ||
| HOMD Taxon-ID | HMT-677 | ||
| Species Name (in use by HOMD) | Streptococcus mitis | ||
| Organism Name (as deposited) | HMT-677 Streptococcus mitis UMB0079b | ||
| Strain or Isolate | UMB0079b | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mitis_AT |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 161.6x | ||
| Contigs |
|
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| Total Sequence Length | 1,960,083 (bp) | ||
| GC Percentage | 40.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/315/GCA_002871315.1_ASM287131v1 | ||
| CDS | 1837 | ||
| Genes | 1954 | ||
| mRNA | 1954 | ||
| misc RNA | 63 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.38 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.05 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Streptococcus__mitis__HMT_677
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM287131v1 |
| GenBank Assembly Accession | GCA_002871315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002871315.1 [NCBI] |
| BioSample | SAMN07580858 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-08-30T23:28:04.080 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PNFQ01 |
| NCBI TaxID | 1458253 |
| Isolation Source | catheter |
| Geo Location | USA: Maywood, IL |
