Genome Meta Information: Corynebacterium aurimucosum UMB1300 (GCA_002871735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002871735.1 | ||
| HOMD Taxon-ID | HMT-0450 | ||
| Species Name (in use by HOMD) | Corynebacterium aurimucosum | ||
| Organism Name (as deposited) | HMT-450 Corynebacterium aurimucosum clade-450 UMB1300 | ||
| Strain or Isolate | UMB1300 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium hiratae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 97.76 | ||
| Contigs |
|
||
| Total Sequence Length | 2,815,167 (bp) | ||
| GC Percentage | 61.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/735/GCA_002871735.1_ASM287173v1 | ||
| CDS | 2561 | ||
| Genes | 2628 | ||
| mRNA | 0 | ||
| misc RNA | 7 | ||
| rRNA | 7 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 89.23 % | ||
| CheckM Completeness | 87.38 % | ||
| CheckM Contamination | 4.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM287173v1 |
| GenBank Assembly Accession | GCA_002871735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002871735.1 [NCBI] |
| BioSample | SAMN07511397 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-08-16T12:32:05.053 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PNHI01 |
| NCBI TaxID | 169292 |
| Isolation Source | catheter |
| Geo Location | USA: Maywood, IL |
