Genome Meta Information: Aerococcus viridans UMB0240 (GCA_002871935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002871935.1 | ||
| HOMD Taxon-ID | HMT-312 | ||
| Species Name (in use by HOMD) | Aerococcus viridans | ||
| Organism Name (as deposited) | HMT-312 Aerococcus viridans UMB0240 | ||
| Strain or Isolate | UMB0240 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus; s__Aerococcus viridans_B |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 167.9x | ||
| Contigs |
|
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| Total Sequence Length | 1,921,807 (bp) | ||
| GC Percentage | 37.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/871/935/GCA_002871935.1_ASM287193v1 | ||
| CDS | 1751 | ||
| Genes | 1856 | ||
| mRNA | 1856 | ||
| misc RNA | 42 | ||
| rRNA | 7 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 85.14 % | ||
| CheckM Completeness | 98.9 % | ||
| CheckM Contamination | 0.55 % | ||
| CheckM2 Completeness | 99.81 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM287193v1 |
| GenBank Assembly Accession | GCA_002871935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002871935.1 [NCBI] |
| BioSample | SAMN07511387 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-08-16T12:32:04.860 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PNHQ01 |
| NCBI TaxID | 1377 |
| Isolation Source | catheter |
| Geo Location | USA: Maywood, IL |
