Genome Meta Information: Haemophilus parainfluenzae UMB0748 (GCA_002884755.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002884755.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae UMB0748 | ||
| Strain or Isolate | UMB0748 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 536.89 | ||
| Contigs |
|
||
| Total Sequence Length | 2,069,115 (bp) | ||
| GC Percentage | 39.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/755/GCA_002884755.1_ASM288475v1 | ||
| CDS | 2005 | ||
| Genes | 2098 | ||
| mRNA | 2098 | ||
| misc RNA | 27 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.02 % | ||
| CheckM Completeness | 99.31 % | ||
| CheckM Contamination | 0.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM288475v1 |
| GenBank Assembly Accession | GCA_002884755.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002884755.1 [NCBI] |
| BioSample | SAMN07511415 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-08-16T12:32:05.350 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PNGS01 |
| NCBI TaxID | 729 |
| Isolation Source | catheter |
| Geo Location | USA: Maywood, IL |
