Genome Meta Information: Gardnerella piotii UMB0663 (GCA_002884815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002884815.1 | ||
| HOMD Taxon-ID | HMT-0846 | ||
| Species Name (in use by HOMD) | Gardnerella piotii | ||
| Organism Name (as deposited) | HMT-846 Gardnerella piotii UMB0663 | ||
| Strain or Isolate | UMB0663 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium piotii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 613.9 | ||
| Contigs |
|
||
| Total Sequence Length | 1,597,294 (bp) | ||
| GC Percentage | 42.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/884/815/GCA_002884815.1_ASM288481v1 | ||
| CDS | 1247 | ||
| Genes | 1312 | ||
| mRNA | 1312 | ||
| misc RNA | 15 | ||
| rRNA | 4 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.95 % | ||
| CheckM Completeness | 48.74 % | ||
| CheckM Contamination | 10.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM288481v1 |
| GenBank Assembly Accession | GCA_002884815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002884815.1 [NCBI] |
| BioSample | SAMN07511410 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-08-16T12:32:05.277 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PNGX01 |
| NCBI TaxID | 33031 |
| Isolation Source | catheter |
| Geo Location | USA: Maywood, IL |
