Genome Meta Information: Staphylococcus lugdunensis NCTC 12217 (GCA_002901705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002901705.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis NCTC 12217 | ||
| Strain or Isolate | NCTC 12217 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 35.15 | ||
| Contigs |
|
||
| Total Sequence Length | 2,519,514 (bp) | ||
| GC Percentage | 33.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/901/705/GCA_002901705.1_ASM290170v1 | ||
| CDS | 2347 | ||
| Genes | 2477 | ||
| mRNA | 2477 | ||
| misc RNA | 81 | ||
| rRNA | 4 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.95 % | ||
| CheckM Completeness | 95.99 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM290170v1 |
| GenBank Assembly Accession | GCA_002901705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002901705.1 [NCBI] |
| BioSample | SAMN06177169 [NCBI] |
| BioProject | PRJNA339206 [NCBI] |
| Submitter | Modernising Medical Microbiology |
| Submission Date | 2016-12-23T07:51:16.406 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PPPV01 |
| NCBI TaxID | 28035 |
| Isolation Source | Axillary lymph node |
| Geo Location | United Kingdom: London |
