Genome Meta Information: Streptococcus salivarius F6-1 (GCA_002925865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002925865.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius F6-1 | ||
| Strain or Isolate | F6-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 220 | ||
| Contigs |
|
||
| Total Sequence Length | 2,206,463 (bp) | ||
| GC Percentage | 39.98 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/925/865/GCA_002925865.1_ASM292586v1 | ||
| CDS | 1980 | ||
| Genes | 2098 | ||
| mRNA | 2098 | ||
| misc RNA | 32 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.22 % | ||
| CheckM Completeness | 97.12 % | ||
| CheckM Contamination | 1.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM292586v1 |
| GenBank Assembly Accession | GCA_002925865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002925865.1 [NCBI] |
| BioSample | SAMN07357131 [NCBI] |
| BioProject | PRJNA394657 [NCBI] |
| Submitter | UMR1128 DynAMic |
| Submission Date | 2017-07-17T06:38:04.410 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NPDJ01 |
| NCBI TaxID | 1304 |
| Isolation Source | healthy baby |
| Geo Location | France: Vandoeuvre-les-Nancy |
