Genome Meta Information: Bacteroides caccae ATCC 43185 (GCA_002959715.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002959715.1 | ||
| HOMD Taxon-ID | HMT-967 | ||
| Species Name (in use by HOMD) | Bacteroides caccae | ||
| Organism Name (as deposited) | HMT-967 Bacteroides caccae ATCC 43185 | ||
| Strain or Isolate | ATCC 43185 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides; s__Bacteroides caccae |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 53.0x | ||
| Contigs |
|
||
| Total Sequence Length | 4,577,788 (bp) | ||
| GC Percentage | 41.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/715/GCA_002959715.1_ASM295971v1 | ||
| CDS | 3674 | ||
| Genes | 3762 | ||
| mRNA | 3762 | ||
| misc RNA | 13 | ||
| rRNA | 0 | ||
| tRNA | 74 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.3 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 99.95 % | ||
| CheckM2 Contamination | 0.53 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM295971v1 |
| GenBank Assembly Accession | GCA_002959715.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002959715.1 [NCBI] |
| BioSample | SAMN08570051 [NCBI] |
| BioProject | PRJNA343143 [NCBI] |
| Submitter | Mount Sinai School of Medicine |
| Submission Date | 2018-02-20T18:03:05.016 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PUEQ01 |
| NCBI TaxID | 47678 |
| Isolation Source | not applicable |
| Geo Location | missing |
