Genome Meta Information: Veillonella atypica T34266-5 (GCA_002959815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002959815.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica T34266-5 | ||
| Strain or Isolate | T34266-5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,060,569 (bp) | ||
| GC Percentage | 39.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/959/815/GCA_002959815.1_ASM295981v1 | ||
| CDS | 1845 | ||
| Genes | 1928 | ||
| mRNA | 1928 | ||
| misc RNA | 18 | ||
| rRNA | 14 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.98 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM295981v1 |
| GenBank Assembly Accession | GCA_002959815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002959815.1 [NCBI] |
| BioSample | SAMD00090157 [NCBI] |
| BioProject | PRJDB3830 [NCBI] |
| Submitter | Health Sciences University of Hokkaido |
| Submission Date | 2018-01-13T01:00:38.877 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PPCZ01 |
| NCBI TaxID | 2027457 |
| Isolation Source | |
| Geo Location | Japan:Hokkaido, Tobetsu-cho |
