Genome Meta Information: Haemophilus influenzae 5P28H1 (GCA_002966615.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002966615.1 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae 5P28H1 | ||
| Strain or Isolate | 5P28H1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | PacBio RS II; Illumina HiSeq 2000 | ||
| Genome Coverage | 59.4537 | ||
| Contigs |
|
||
| Total Sequence Length | 1,886,450 (bp) | ||
| GC Percentage | 38.16 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/966/615/GCA_002966615.1_ASM296661v1 | ||
| CDS | 1779 | ||
| Genes | 1892 | ||
| mRNA | 1892 | ||
| misc RNA | 35 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.91 % | ||
| CheckM Completeness | 99.34 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM296661v1 |
| GenBank Assembly Accession | GCA_002966615.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002966615.1 [NCBI] |
| BioSample | SAMN06203638 [NCBI] |
| BioProject | PRJNA358390 [NCBI] |
| Submitter | Institute for Genome Sciences, University of Maryland, Baltimore |
| Submission Date | 2017-01-04T14:27:20.560 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | sputum |
| Geo Location | USA: Buffalo, NY |
