Genome Meta Information: Haemophilus influenzae 93P28H1 (GCA_002988215.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002988215.2 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae 93P28H1 | ||
| Strain or Isolate | 93P28H1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | PacBio Sequel II 2.0 | ||
| Genome Coverage | 99000 | ||
| Contigs |
|
||
| Total Sequence Length | 1,812,418 (bp) | ||
| GC Percentage | 38.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/988/215/GCA_002988215.2_ASM298821v2 | ||
| CDS | 1674 | ||
| Genes | 1782 | ||
| mRNA | 1782 | ||
| misc RNA | 30 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.23 % | ||
| CheckM Completeness | 99.41 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM298821v2 |
| GenBank Assembly Accession | GCA_002988215.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002988215.2 [NCBI] |
| BioSample | SAMN06203705 [NCBI] |
| BioProject | PRJNA358390 [NCBI] |
| Submitter | Institute for Genome Sciences, University of Maryland, Baltimore |
| Submission Date | 2017-01-04T14:27:23.683 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | sputum |
| Geo Location | USA: Buffalo, NY |
