Genome Meta Information: Streptococcus mutans LAR01 (GCA_002995555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002995555.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans LAR01 | ||
| Strain or Isolate | LAR01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,088,369 (bp) | ||
| GC Percentage | 36.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/995/555/GCA_002995555.1_ASM299555v1 | ||
| CDS | 1956 | ||
| Genes | 2103 | ||
| mRNA | 2103 | ||
| misc RNA | 66 | ||
| rRNA | 15 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.2 % | ||
| CheckM Completeness | 98.62 % | ||
| CheckM Contamination | 1.81 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM299555v1 |
| GenBank Assembly Accession | GCA_002995555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002995555.1 [NCBI] |
| BioSample | SAMN07671786 [NCBI] |
| BioProject | PRJNA407965 [NCBI] |
| Submitter | University of Florida |
| Submission Date | 2017-09-19T15:20:06.403 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1309 |
| Isolation Source | saliva from healthy adult |
| Geo Location | USA: Rochester, NY |
