Genome Meta Information: Capnocytophaga ochracea F0512 (GCA_002998835.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002998835.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea F0512 | ||
| Strain or Isolate | F0512 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 119 | ||
| Contigs |
|
||
| Total Sequence Length | 2,682,541 (bp) | ||
| GC Percentage | 39.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/998/835/GCA_002998835.1_ASM299883v1 | ||
| CDS | 2258 | ||
| Genes | 2326 | ||
| mRNA | 2326 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.83 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM299883v1 |
| GenBank Assembly Accession | GCA_002998835.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002998835.1 [NCBI] |
| BioSample | SAMN08439036 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2018-01-30T17:19:05.146 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1316593 |
| Isolation Source | coronal/gingival |
| Geo Location | USA: Cambridge, MA |
