Genome Meta Information: Streptococcus anginosus 11 (GCA_002999475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002999475.1 | ||
| HOMD Taxon-ID | HMT-0543 | ||
| Species Name (in use by HOMD) | Streptococcus anginosus | ||
| Organism Name (as deposited) | HMT-543 Streptococcus anginosus 11 | ||
| Strain or Isolate | 11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus vaginalis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 5785 | ||
| Contigs |
|
||
| Total Sequence Length | 1,850,270 (bp) | ||
| GC Percentage | 38.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/475/GCA_002999475.1_ASM299947v1 | ||
| CDS | 1807 | ||
| Genes | 1895 | ||
| mRNA | 1895 | ||
| misc RNA | 45 | ||
| rRNA | 4 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.33 % | ||
| CheckM Completeness | 97.11 % | ||
| CheckM Contamination | 0.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM299947v1 |
| GenBank Assembly Accession | GCA_002999475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002999475.1 [NCBI] |
| BioSample | SAMN08611361 [NCBI] |
| BioProject | PRJNA436026 [NCBI] |
| Submitter | Oregon Health and Science University |
| Submission Date | 2018-02-26T17:33:03.843 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PVST01 |
| NCBI TaxID | 1328 |
| Isolation Source | pus from dental abscess |
| Geo Location | United Kingdom: Newcastle Univ |
