Genome Meta Information: Fusobacterium nucleatum_sensu_stricto ATCC 25586 (GCA_003019295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003019295.1 | ||
| HOMD Taxon-ID | HMT-0698 | ||
| Species Name (in use by HOMD) | Fusobacterium nucleatum_sensu_stricto | ||
| Organism Name (as deposited) | HMT-698 Fusobacterium nucleatum_sensu_stricto ATCC 25586 | ||
| Strain or Isolate | ATCC 25586 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium nucleatum |
||
| Sequencing Technology | Illumina, MinION | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 2,180,101 (bp) | ||
| GC Percentage | 27.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/295/GCA_003019295.1_ASM301929v1 | ||
| CDS | 2013 | ||
| Genes | 2094 | ||
| mRNA | 2094 | ||
| misc RNA | 18 | ||
| rRNA | 15 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.5 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM301929v1 |
| GenBank Assembly Accession | GCA_003019295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003019295.1 [NCBI] |
| BioSample | SAMN08706662 [NCBI] |
| BioProject | PRJNA433545 [NCBI] |
| Submitter | Virginia Tech |
| Submission Date | 2018-03-13T14:18:03.926 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 190304 |
| Isolation Source | Oral cavity |
| Geo Location | Not determined |
