Genome Meta Information: Fusobacterium necrophorum 1_1_36S (GCA_003019715.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003019715.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum 1_1_36S | ||
| Strain or Isolate | 1_1_36S | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Illumina, MinION | ||
| Genome Coverage | 56 | ||
| Contigs |
|
||
| Total Sequence Length | 2,286,018 (bp) | ||
| GC Percentage | 34.67 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/715/GCA_003019715.1_ASM301971v1 | ||
| CDS | 2119 | ||
| Genes | 2205 | ||
| mRNA | 2205 | ||
| misc RNA | 18 | ||
| rRNA | 17 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.93 % | ||
| CheckM Completeness | 92.29 % | ||
| CheckM Contamination | 2.66 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM301971v1 |
| GenBank Assembly Accession | GCA_003019715.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003019715.1 [NCBI] |
| BioSample | SAMN08501105 [NCBI] |
| BioProject | PRJNA433545 [NCBI] |
| Submitter | Virginia Tech |
| Submission Date | 2018-02-08T15:47:03.070 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 143387 |
| Isolation Source | Terminal ileum |
| Geo Location | Not determined |
