Genome Meta Information: Fusobacterium periodonticum 2_1_31 (GCA_003019755.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003019755.1 | ||
| HOMD Taxon-ID | HMT-0201 | ||
| Species Name (in use by HOMD) | Fusobacterium periodonticum | ||
| Organism Name (as deposited) | HMT-201 Fusobacterium periodonticum 2_1_31 | ||
| Strain or Isolate | 2_1_31 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium periodonticum_D |
||
| Sequencing Technology | Illumina, MinION | ||
| Genome Coverage | 70 | ||
| Contigs |
|
||
| Total Sequence Length | 2,541,084 (bp) | ||
| GC Percentage | 28.13 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/019/755/GCA_003019755.1_ASM301975v1 | ||
| CDS | 2379 | ||
| Genes | 2461 | ||
| mRNA | 2461 | ||
| misc RNA | 21 | ||
| rRNA | 15 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.96 % | ||
| CheckM Completeness | 98.37 % | ||
| CheckM Contamination | 0.03 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM301975v1 |
| GenBank Assembly Accession | GCA_003019755.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003019755.1 [NCBI] |
| BioSample | SAMN08501101 [NCBI] |
| BioProject | PRJNA433545 [NCBI] |
| Submitter | Virginia Tech |
| Submission Date | 2018-02-08T15:42:05.933 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 860 |
| Isolation Source | Colon |
| Geo Location | Not determined |
