Genome Meta Information: Dietzia cinnamea AMT (GCA_003122005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003122005.1 | ||
| HOMD Taxon-ID | HMT-0368 | ||
| Species Name (in use by HOMD) | Dietzia cinnamea | ||
| Organism Name (as deposited) | HMT-368 Dietzia cinnamea AMT | ||
| Strain or Isolate | AMT | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia; s__Dietzia cinnamea |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 68 | ||
| Contigs |
|
||
| Total Sequence Length | 3,406,678 (bp) | ||
| GC Percentage | 70.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/122/005/GCA_003122005.1_ASM312200v1 | ||
| CDS | 3208 | ||
| Genes | 3286 | ||
| mRNA | 3286 | ||
| misc RNA | 21 | ||
| rRNA | 4 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 86.73 % | ||
| CheckM Completeness | 91.6 % | ||
| CheckM Contamination | 1.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM312200v1 |
| GenBank Assembly Accession | GCA_003122005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003122005.1 [NCBI] |
| BioSample | SAMN09060711 [NCBI] |
| BioProject | PRJNA454890 [NCBI] |
| Submitter | University of New Hampshire - Manchester |
| Submission Date | 2018-05-03T15:58:11.666 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QETM01 |
| NCBI TaxID | 37915 |
| Isolation Source | laboratory |
| Geo Location | USA: Manchester, NH |
