Genome Meta Information: Aggregatibacter aphrophilus CCUG 11575 (GCA_003130375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003130375.1 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus CCUG 11575 | ||
| Strain or Isolate | CCUG 11575 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 155.5x | ||
| Contigs |
|
||
| Total Sequence Length | 2,368,867 (bp) | ||
| GC Percentage | 42.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/130/375/GCA_003130375.1_ASM313037v1 | ||
| CDS | 2135 | ||
| Genes | 2244 | ||
| mRNA | 2244 | ||
| misc RNA | 53 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.1 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.33 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM313037v1 |
| GenBank Assembly Accession | GCA_003130375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003130375.1 [NCBI] |
| BioSample | SAMN07488442 [NCBI] |
| BioProject | PRJNA397823 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2017-08-10T04:04:07.797 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NRDC01 |
| NCBI TaxID | 732 |
| Isolation Source | brain abscess |
| Geo Location | Sweden |
