Genome Meta Information: Streptococcus sobrinus SL1 (GCA_003172995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003172995.1 | ||
| HOMD Taxon-ID | HMT-0768 | ||
| Species Name (in use by HOMD) | Streptococcus sobrinus | ||
| Organism Name (as deposited) | HMT-768 Streptococcus sobrinus SL1 | ||
| Strain or Isolate | SL1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sobrinus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 2,198,571 (bp) | ||
| GC Percentage | 43.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/172/995/GCA_003172995.1_ASM317299v1 | ||
| CDS | 2046 | ||
| Genes | 2167 | ||
| mRNA | 2167 | ||
| misc RNA | 35 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.13 % | ||
| CheckM Contamination | 0.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM317299v1 |
| GenBank Assembly Accession | GCA_003172995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003172995.1 [NCBI] |
| BioSample | SAMN09214222 [NCBI] |
| BioProject | PRJNA471712 [NCBI] |
| Submitter | University of Illinois at Urbana-Champaign |
| Submission Date | 2018-05-16T15:16:13.676 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1310 |
| Isolation Source | dental plaque |
| Geo Location | missing |
