Genome Meta Information: Streptococcus sobrinus NIDR 6715-7 (GCA_003176795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003176795.1 | ||
| HOMD Taxon-ID | HMT-0768 | ||
| Species Name (in use by HOMD) | Streptococcus sobrinus | ||
| Organism Name (as deposited) | HMT-768 Streptococcus sobrinus NIDR 6715-7 | ||
| Strain or Isolate | NIDR 6715-7 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sobrinus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 2,145,017 (bp) | ||
| GC Percentage | 43.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/176/795/GCA_003176795.1_ASM317679v1 | ||
| CDS | 1967 | ||
| Genes | 2084 | ||
| mRNA | 2084 | ||
| misc RNA | 35 | ||
| rRNA | 18 | ||
| tRNA | 63 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.92 % | ||
| CheckM Completeness | 98.75 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM317679v1 |
| GenBank Assembly Accession | GCA_003176795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003176795.1 [NCBI] |
| BioSample | SAMN09232464 [NCBI] |
| BioProject | PRJNA471712 [NCBI] |
| Submitter | University of Illinois at Urbana-Champaign |
| Submission Date | 2018-05-21T15:08:03.574 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1310 |
| Isolation Source | Human dental plaque |
| Geo Location | missing |
