Genome Meta Information: Corynebacterium striatum 2425 (GCA_003202355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003202355.1 | ||
| HOMD Taxon-ID | HMT-0072 | ||
| Species Name (in use by HOMD) | Corynebacterium striatum | ||
| Organism Name (as deposited) | HMT-072 Corynebacterium striatum 2425 | ||
| Strain or Isolate | 2425 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium striatum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 147 | ||
| Contigs |
|
||
| Total Sequence Length | 2,847,990 (bp) | ||
| GC Percentage | 59.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/202/355/GCA_003202355.1_ASM320235v1 | ||
| CDS | 2693 | ||
| Genes | 2763 | ||
| mRNA | 2763 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.58 % | ||
| CheckM Completeness | 98.66 % | ||
| CheckM Contamination | 0.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM320235v1 |
| GenBank Assembly Accession | GCA_003202355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003202355.1 [NCBI] |
| BioSample | SAMN07535082 [NCBI] |
| BioProject | PRJNA399495 [NCBI] |
| Submitter | Fundacao Oswaldo Cruz |
| Submission Date | 2017-08-22T11:52:16.060 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NRIP01 |
| NCBI TaxID | 43770 |
| Isolation Source | blood |
| Geo Location | Brazil: Rio de Janeiro |
