Genome Meta Information: Streptococcus salivarius HS0302 (GCA_003231475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003231475.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius HS0302 | ||
| Strain or Isolate | HS0302 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp001556435 |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 90 | ||
| Contigs |
|
||
| Total Sequence Length | 2,437,080 (bp) | ||
| GC Percentage | 39.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/231/475/GCA_003231475.1_ASM323147v1 | ||
| CDS | 2202 | ||
| Genes | 2327 | ||
| mRNA | 2327 | ||
| misc RNA | 51 | ||
| rRNA | 18 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.17 % | ||
| CheckM Completeness | 97.42 % | ||
| CheckM Contamination | 4.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM323147v1 |
| GenBank Assembly Accession | GCA_003231475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003231475.1 [NCBI] |
| BioSample | SAMN07563134 [NCBI] |
| BioProject | PRJNA400312 [NCBI] |
| Submitter | Texas A&M |
| Submission Date | 2017-08-26T17:48:02.893 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NSIW01 |
| NCBI TaxID | 1304 |
| Isolation Source | Identified as lab contaminant that had potent inhibitory activity against human |
| Geo Location | USA: Texas College Station |
