Genome Meta Information: Aggregatibacter segnis C2001002503 (GCA_003252685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252685.1 | ||
| HOMD Taxon-ID | HMT-762 | ||
| Species Name (in use by HOMD) | Aggregatibacter segnis | ||
| Organism Name (as deposited) | HMT-762 Aggregatibacter segnis C2001002503 | ||
| Strain or Isolate | C2001002503 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter segnis_B |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 31.0x | ||
| Contigs |
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| Total Sequence Length | 1,918,287 (bp) | ||
| GC Percentage | 42.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/685/GCA_003252685.1_ASM325268v1 | ||
| CDS | 1772 | ||
| Genes | 1955 | ||
| mRNA | 1955 | ||
| misc RNA | 122 | ||
| rRNA | 9 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.24 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.01 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325268v1 |
| GenBank Assembly Accession | GCA_003252685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252685.1 [NCBI] |
| BioSample | SAMN09011142 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.303 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEPM01 |
| NCBI TaxID | 739 |
| Isolation Source | sputum |
| Geo Location | USA: Minnesota |
