Genome Meta Information: Haemophilus parainfluenzae C2004002729 (GCA_003252795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252795.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae C2004002729 | ||
| Strain or Isolate | C2004002729 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_K |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 53 | ||
| Contigs |
|
||
| Total Sequence Length | 1,898,682 (bp) | ||
| GC Percentage | 39.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/795/GCA_003252795.1_ASM325279v1 | ||
| CDS | 1800 | ||
| Genes | 1885 | ||
| mRNA | 1885 | ||
| misc RNA | 24 | ||
| rRNA | 9 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.5 % | ||
| CheckM Completeness | 99.18 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325279v1 |
| GenBank Assembly Accession | GCA_003252795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252795.1 [NCBI] |
| BioSample | SAMN09011138 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.237 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEPQ01 |
| NCBI TaxID | 729 |
| Isolation Source | sputum |
| Geo Location | USA: Minnesota |
