Genome Meta Information: Haemophilus sputorum C2015005679 (GCA_003252875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252875.1 | ||
| HOMD Taxon-ID | HMT-0944 | ||
| Species Name (in use by HOMD) | Haemophilus sputorum | ||
| Organism Name (as deposited) | HMT-944 Haemophilus sputorum C2015005679 | ||
| Strain or Isolate | C2015005679 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A; s__Haemophilus_A sputorum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 43 | ||
| Contigs |
|
||
| Total Sequence Length | 2,001,559 (bp) | ||
| GC Percentage | 39.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/875/GCA_003252875.1_ASM325287v1 | ||
| CDS | 1884 | ||
| Genes | 1969 | ||
| mRNA | 1969 | ||
| misc RNA | 24 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.27 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325287v1 |
| GenBank Assembly Accession | GCA_003252875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252875.1 [NCBI] |
| BioSample | SAMN09011121 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:03.927 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEQH01 |
| NCBI TaxID | 1078480 |
| Isolation Source | blood |
| Geo Location | USA: Minnesota |
