Genome Meta Information: Haemophilus parainfluenzae C2005004058 (GCA_003252915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252915.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae C2005004058 | ||
| Strain or Isolate | C2005004058 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_AE |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 42 | ||
| Contigs |
|
||
| Total Sequence Length | 2,079,145 (bp) | ||
| GC Percentage | 39.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/915/GCA_003252915.1_ASM325291v1 | ||
| CDS | 1968 | ||
| Genes | 2056 | ||
| mRNA | 2056 | ||
| misc RNA | 28 | ||
| rRNA | 9 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.77 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325291v1 |
| GenBank Assembly Accession | GCA_003252915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252915.1 [NCBI] |
| BioSample | SAMN09011137 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.220 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEPR01 |
| NCBI TaxID | 729 |
| Isolation Source | wound |
| Geo Location | USA: Minnesota |
