Genome Meta Information: Haemophilus parahaemolyticus C2006000788 (GCA_003252925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252925.1 | ||
| HOMD Taxon-ID | HMT-0945 | ||
| Species Name (in use by HOMD) | Haemophilus parahaemolyticus | ||
| Organism Name (as deposited) | HMT-945 Haemophilus parahaemolyticus C2006000788 | ||
| Strain or Isolate | C2006000788 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A; s__Haemophilus_A parahaemolyticus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 72 | ||
| Contigs |
|
||
| Total Sequence Length | 2,117,430 (bp) | ||
| GC Percentage | 40.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/925/GCA_003252925.1_ASM325292v1 | ||
| CDS | 1998 | ||
| Genes | 2085 | ||
| mRNA | 2085 | ||
| misc RNA | 23 | ||
| rRNA | 9 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.64 % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325292v1 |
| GenBank Assembly Accession | GCA_003252925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252925.1 [NCBI] |
| BioSample | SAMN09011136 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.203 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEPS01 |
| NCBI TaxID | 735 |
| Isolation Source | Bronchial wash |
| Geo Location | USA: Minnesota |
