Genome Meta Information: Aggregatibacter aphrophilus C2008001229 (GCA_003252965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252965.1 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus C2008001229 | ||
| Strain or Isolate | C2008001229 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 51.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,288,398 (bp) | ||
| GC Percentage | 42.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/965/GCA_003252965.1_ASM325296v1 | ||
| CDS | 2127 | ||
| Genes | 2242 | ||
| mRNA | 2242 | ||
| misc RNA | 53 | ||
| rRNA | 9 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.05 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.11 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325296v1 |
| GenBank Assembly Accession | GCA_003252965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252965.1 [NCBI] |
| BioSample | SAMN09011133 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.157 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEPV01 |
| NCBI TaxID | 732 |
| Isolation Source | brain abscess |
| Geo Location | USA: Minnesota |
