Genome Meta Information: Haemophilus parainfluenzae C2011020591 (GCA_003253085.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003253085.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae C2011020591 | ||
| Strain or Isolate | C2011020591 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_M |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 37 | ||
| Contigs |
|
||
| Total Sequence Length | 1,940,388 (bp) | ||
| GC Percentage | 39.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/253/085/GCA_003253085.1_ASM325308v1 | ||
| CDS | 1826 | ||
| Genes | 1917 | ||
| mRNA | 1917 | ||
| misc RNA | 28 | ||
| rRNA | 11 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.37 % | ||
| CheckM Completeness | 99.13 % | ||
| CheckM Contamination | 0.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325308v1 |
| GenBank Assembly Accession | GCA_003253085.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003253085.1 [NCBI] |
| BioSample | SAMN09011124 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.010 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEQE01 |
| NCBI TaxID | 729 |
| Isolation Source | sputum |
| Geo Location | USA: Minnesota |
