Genome Meta Information: Absconditicoccaceae [G1] bacterium HMT-345 HOT-345 (GCA_003260355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003260355.1 | ||
| HOMD Taxon-ID | HMT-345 | ||
| Species Name (in use by HOMD) | Absconditicoccaceae [G1] bacterium HMT-345 | ||
| Organism Name (as deposited) | HMT-345 Absconditicoccaceae [G1] bacterium HMT-345 HOT-345 | ||
| Strain or Isolate | HOT-345 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345; s__HOT-345 sp003260355 |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 500.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,144,105 (bp) | ||
| GC Percentage | 38.21 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/260/355/GCA_003260355.1_ASM326035v1 | ||
| CDS | 2088 | ||
| Genes | 2130 | ||
| mRNA | 2130 | ||
| misc RNA | 0 | ||
| rRNA | 2 | ||
| tRNA | 40 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 74.16 % | ||
| CheckM Contamination | 3.37 % | ||
| CheckM2 Completeness | 93.81 % | ||
| CheckM2 Contamination | 3.78 % | ||
| Difference
between CheckM and CheckM2 Completeness |
23.4 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM326035v1 |
| GenBank Assembly Accession | GCA_003260355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN06040740 [NCBI] |
| BioProject | PRJNA352960 [NCBI] |
| Submitter | Oak Ridge National Laboratory |
| Submission Date | 2016-11-18T14:37:04.853 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | MPSQ01 |
| NCBI TaxID | 1540874 |
| Isolation Source | single cell isolated by MDA; saliva/oral biofilm |
| Geo Location | USA:Oak Ridge |
