Genome Meta Information: Dolosigranulum pigrum KPL1939_CDC4792-99 (GCA_003263965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003263965.1 | ||
| HOMD Taxon-ID | HMT-0813 | ||
| Species Name (in use by HOMD) | Dolosigranulum pigrum | ||
| Organism Name (as deposited) | HMT-813 Dolosigranulum pigrum KPL1939_CDC4792-99 | ||
| Strain or Isolate | KPL1939_CDC4792-99 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum; s__Dolosigranulum pigrum |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 92 | ||
| Contigs |
|
||
| Total Sequence Length | 1,893,917 (bp) | ||
| GC Percentage | 39.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/263/965/GCA_003263965.1_ASM326396v1 | ||
| CDS | 1734 | ||
| Genes | 1844 | ||
| mRNA | 1844 | ||
| misc RNA | 47 | ||
| rRNA | 6 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.62 % | ||
| CheckM Completeness | 98.56 % | ||
| CheckM Contamination | 0.51 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM326396v1 |
| GenBank Assembly Accession | GCA_003263965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003263965.1 [NCBI] |
| BioSample | SAMN06624379 [NCBI] |
| BioProject | PRJNA379966 [NCBI] |
| Submitter | Forsyth Institute |
| Submission Date | 2017-03-21T13:48:04.370 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NAQP01 |
| NCBI TaxID | 29394 |
| Isolation Source | nasopharyngeal |
| Geo Location | USA: AZ |
