Genome Meta Information: Gardnerella piotii W11 (GCA_003369875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003369875.1 | ||
| HOMD Taxon-ID | HMT-0846 | ||
| Species Name (in use by HOMD) | Gardnerella piotii | ||
| Organism Name (as deposited) | HMT-846 Gardnerella piotii W11 | ||
| Strain or Isolate | W11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium piotii |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 15 | ||
| Contigs |
|
||
| Total Sequence Length | 1,566,657 (bp) | ||
| GC Percentage | 42.27 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/369/875/GCA_003369875.1_ASM336987v1 | ||
| CDS | 1197 | ||
| Genes | 1259 | ||
| mRNA | 1259 | ||
| misc RNA | 14 | ||
| rRNA | 2 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 89.7 % | ||
| CheckM Completeness | 99.86 % | ||
| CheckM Contamination | 0.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM336987v1 |
| GenBank Assembly Accession | GCA_003369875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003369875.1 [NCBI] |
| BioSample | SAMN03145604 [NCBI] |
| BioProject | PRJNA265103 [NCBI] |
| Submitter | University of Saskatchewan |
| Submission Date | 2014-10-28T13:48:33.097 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LGOX01 |
| NCBI TaxID | 2702 |
| Isolation Source | vaginal swab sample |
| Geo Location | Canada: Winnipeg |
