Genome Meta Information: Gardnerella piotii N153 (GCA_003369935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003369935.1 | ||
| HOMD Taxon-ID | HMT-0846 | ||
| Species Name (in use by HOMD) | Gardnerella piotii | ||
| Organism Name (as deposited) | HMT-846 Gardnerella piotii N153 | ||
| Strain or Isolate | N153 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium sp947252975 |
||
| Sequencing Technology | 454 | ||
| Genome Coverage | 15 | ||
| Contigs |
|
||
| Total Sequence Length | 1,541,756 (bp) | ||
| GC Percentage | 42.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/369/935/GCA_003369935.1_ASM336993v1 | ||
| CDS | 1206 | ||
| Genes | 1269 | ||
| mRNA | 1269 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 89.6 % | ||
| CheckM Completeness | 97.65 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM336993v1 |
| GenBank Assembly Accession | GCA_003369935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003369935.1 [NCBI] |
| BioSample | SAMN03145603 [NCBI] |
| BioProject | PRJNA265102 [NCBI] |
| Submitter | University of Saskatchewan |
| Submission Date | 2014-10-28T13:45:33.217 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LGOY01 |
| NCBI TaxID | 2702 |
| Isolation Source | vaginal swab sample |
| Geo Location | Kenya: Nairobi |
