Genome Meta Information: Haemophilus influenzae P665-7858 (GCA_003425645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003425645.1 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae P665-7858 | ||
| Strain or Isolate | P665-7858 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae_E |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 114 | ||
| Contigs |
|
||
| Total Sequence Length | 1,908,143 (bp) | ||
| GC Percentage | 38.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/425/645/GCA_003425645.1_ASM342564v1 | ||
| CDS | 1840 | ||
| Genes | 1951 | ||
| mRNA | 1951 | ||
| misc RNA | 33 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.14 % | ||
| CheckM Completeness | 98.96 % | ||
| CheckM Contamination | 0.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM342564v1 |
| GenBank Assembly Accession | GCA_003425645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003425645.1 [NCBI] |
| BioSample | SAMN07421940 [NCBI] |
| BioProject | PRJNA282520 [NCBI] |
| Submitter | Institute of Agrobiotechnology |
| Submission Date | 2017-07-28T08:56:06.950 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | sputum |
| Geo Location | Spain:Catalunya |
