Genome Meta Information: Streptococcus parasanguinis TF04-5-2 (GCA_003437975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003437975.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis TF04-5-2 | ||
| Strain or Isolate | TF04-5-2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus parasanguinis_X |
||
| Sequencing Technology | IonProton | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,029,175 (bp) | ||
| GC Percentage | 42.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/437/975/GCA_003437975.1_ASM343797v1 | ||
| CDS | 2055 | ||
| Genes | 2140 | ||
| mRNA | 2140 | ||
| misc RNA | 33 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.39 % | ||
| CheckM Completeness | 85.03 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM343797v1 |
| GenBank Assembly Accession | GCA_003437975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003437975.1 [NCBI] |
| BioSample | SAMN09736870 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-30T02:31:15.787 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QSST01 |
| NCBI TaxID | 1318 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
