Genome Meta Information: Streptococcus vestibularis OM08-1 (GCA_003438185.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003438185.1 | ||
| HOMD Taxon-ID | HMT-0021 | ||
| Species Name (in use by HOMD) | Streptococcus vestibularis | ||
| Organism Name (as deposited) | HMT-021 Streptococcus vestibularis OM08-1 | ||
| Strain or Isolate | OM08-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus vestibularis |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,898,011 (bp) | ||
| GC Percentage | 39.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/438/185/GCA_003438185.1_ASM343818v1 | ||
| CDS | 1795 | ||
| Genes | 1877 | ||
| mRNA | 1877 | ||
| misc RNA | 42 | ||
| rRNA | 3 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.8 % | ||
| CheckM Completeness | 99.76 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM343818v1 |
| GenBank Assembly Accession | GCA_003438185.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003438185.1 [NCBI] |
| BioSample | SAMN09736843 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-30T02:31:15.383 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QSTK01 |
| NCBI TaxID | 1343 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
