Genome Meta Information: Streptococcus ilei OM06-9 (GCA_003438245.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003438245.1 | ||
| HOMD Taxon-ID | HMT-0456 | ||
| Species Name (in use by HOMD) | Streptococcus ilei | ||
| Organism Name (as deposited) | HMT-456 Streptococcus koreensis OM06-9 | ||
| Strain or Isolate | OM06-9 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus ilei |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,965,871 (bp) | ||
| GC Percentage | 42.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/438/245/GCA_003438245.1_ASM343824v1 | ||
| CDS | 1813 | ||
| Genes | 1894 | ||
| mRNA | 0 | ||
| misc RNA | 31 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.11 % | ||
| CheckM Completeness | 99.9 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM343824v1 |
| GenBank Assembly Accession | GCA_003438245.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003438245.1 [NCBI] |
| BioSample | SAMN09736829 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-30T02:31:15.176 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QSTR01 |
| NCBI TaxID | 1156431 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
