Genome Meta Information: Hominimerdicola aceti AF26-25AA (GCA_003460925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003460925.1 | ||
| HOMD Taxon-ID | HMT-0962 | ||
| Species Name (in use by HOMD) | Hominimerdicola aceti | ||
| Organism Name (as deposited) | HMT-962 Hominimerdicola aceti AF26-25AA | ||
| Strain or Isolate | AF26-25AA | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola; s__Hominimerdicola aceti |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,897,972 (bp) | ||
| GC Percentage | 42.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/460/925/GCA_003460925.1_ASM346092v1 | ||
| CDS | 2657 | ||
| Genes | 2728 | ||
| mRNA | 2728 | ||
| misc RNA | 21 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.38 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM346092v1 |
| GenBank Assembly Accession | GCA_003460925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003460925.1 [NCBI] |
| BioSample | SAMN09734514 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:11.400 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QTWC01 |
| NCBI TaxID | 2293169 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
